Installation instruction for mixKernel

Jérôme Mariette, Céline Brouard, Rémi Flamary and Nathalie Vialaneix

27 janvier, 2024

This vignette provide installation for mixKernel instructions.

Installation of python dependencies

The following python modules are required for the functions performing feature selection in mixKernel: autograd, scipy, sklearn, numpy

pip3 install autograd
pip3 install scipy
pip3 install sklearn
pip3 install numpy

Installation of Bioconductor dependencies

Two Bioconductor packages are required for mixKernel installation: mixOmics and phyloseq:

install.packages("BiocManager")
BiocManager::install("mixOmics")
BiocManager::install("phyloseq")

mixKernel installation

Finally the installation is completed with:

install.packages("mixKernel")